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- Creator:
- Savaryn, John P., Toby, Timothy K., Catherman, Adam D., Fellers, Ryan T., LeDuc, Richard D., Thomas, Paul M., Friedewald, John J., Salomon, Daniel R., Abecassis, Michael M., and Kelleher, Neil L.
- Description:
- N/A
- Keyword:
- Biomarker, Mass spectrometry, Proteoform, Proteomics, and Transplant
- Citation to related publication:
- Savaryn, Toby, et al. Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection, Proteomics xxx (2016) xxx-xxx
- Title:
- Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection
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- Creator:
- Welch, Von, Sheppard, Ray, Lingwall, Malinda J., and Stewart, Craig A.
- Description:
- N/A
- Keyword:
- top500, cyberinfrastructure, and campus bridging
- Citation to related publication:
- Title:
- Current structure and past history of US cyberinfrastructure (data set and figures)
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- Creator:
- de Leeuw, Joshua and Motz, Benjamin
- Description:
- N/A
- Citation to related publication:
- Title:
- Data & experiment code for "Psychophysics in a web browser?"
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- Creator:
- Gierut, Judith A.
- Description:
- ZIP file approximately 1MB; CONTENTS: DemogArchive_Across Ss.xlsx; DemogArchive_Reference File.pdf; README.pdf with instructions for use and keys to coding; SOFTWARE: Excel: Mac 2011; Adobe Acrobat XI Pro PDF/A; NOTE: It is imperative to retain Lucida Grande font to preserve the integrity of phonetic transcriptions.
- Keyword:
- phonology, child phonology, clinical phonology, phonological disorders in children, phonological treatment, Learnability Project, and language acquisition
- Citation to related publication:
- https://doi.org/10.5967/K8VD6WCT
- Title:
- Demographics Archive
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- Creator:
- Gierut, Judith A.
- Description:
- ZIP file approximately 158MB; CONTENTS: PhonArchive_Individual Ss (folder with individual .xlsx files); PhonArchive_Reference Files; README.pdf with instructions for use and keys to coding; SOFTWARE: Excel: Mac 2011; Adobe Acrobat XI Pro PDF/A; NOTE: It is imperative to retain Lucida Grande font to preserve the integrity of phonetic transcriptions.
- Keyword:
- phonology, child phonology, clinical phonology, phonological disorders in children, phonological treatment, Learnability Project, and language acquisition
- Citation to related publication:
- https://doi.org/10.5967/K83X84KH
- Title:
- Developmental Phonologies Archive
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- Creator:
- Gierut, Judith A.
- Description:
- ZIP file approximately 95MB; CONTENTS: ExpArchive_Across Ss.xlsx; ExpArchive_Individual Ss; ExpArchive_Reference Files; README.pdf with instructions and key to coding; Software: Excel: Mac 2011; Adobe Acrobat XI Pro PDF/A; NOTE: It is imperative to retain Lucida Grande font to preserve the integrity of phonetic transcriptions.
- Keyword:
- phonology, child phonology, clinical phonology, phonological disorders in children, phonological treatment, Learnability Project, and language acquisition
- Citation to related publication:
- https://doi.org/10.5967/K8057CV3
- Title:
- Experimental Archive
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- Creator:
- Whittaker, Thomas A.
- Description:
- Data transcribed from authority records matching relevant search criteria submitted to OCLC. MARC records retrieved July 11, 2017 via OCLC Connexion Client. Data entry completed September, 12, 2017. Data entered in exact transcription, retaining any errors or typos found in the retrieved records.
- Keyword:
- MARC, Authority records, Controlled vocabulary, Other designation associated with person, and RDA 9.6
- Citation to related publication:
- Title:
- MARC 21 Authority 368 Subfield 'C' Data
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- Creator:
- Cohen, Rachael and Michaels, Sherri
- Description:
- Dataset for "Comparing Transaction Logs to ILL requests to Determine the Persistence of Library Patrons In Obtaining Materials" article. Excel file contains all data in four worksheets Zip file contains four csv files, one for each worksheet: - Comparing Transaction Logs to ILL - 2016 ILL Raw Data.csv - Comparing Transaction Logs to ILL - 2015 ILL Raw Data.csv - Comparing Transaction Logs to ILL - 2016 Zero Search Raw Data.csv - Comparing Transaction Logs to ILL - 2015 Zero Search Raw Data.csv
- Keyword:
- Interlibrary Loan, Zero Search Results, and IUCAT
- Citation to related publication:
- Title:
- Comparing Transaction Logs to ILL - Raw Data
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- Creator:
- Park, Taemin Kim and Morrison, Andrea M.
- Description:
- Date derived from a sample of OCLC records. Data was collected for research published by "Cataloging & Classification Quarterly." Full citation of the paper is: Park, Taemin Kim & Andrea M. Morrison (2017). The Nature and Characteristics of Bibliographic Relationships in RDA Cataloging Records in OCLC at the Beginning of RDA Implementation. Cataloging & Classification Quarterly, vol. 55, issue 6. http://www.tandfonline.com/doi/full/10.1080/01639374.2017.1319451. A post-print of the paper is available here: http://hdl.handle.net/2022/21657.
- Keyword:
- Bibliographic relationships, work-to-work relationships, expression-to-expression relationships, manifestation-to-manifestation relationships, cataloging, MARC fields, and RDA
- Citation to related publication:
- http://www.tandfonline.com/doi/full/10.1080/01639374.2017.1319451
- Title:
- Data for "The Nature and Characteristics of Bibliographic Relationships in RDA Cataloging Records in OCLC at the Beginning of RDA Implementation"
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- Creator:
- Niccum, Brittany A, Lee, Heewook, Ismail, Wazim Mohammed, Tang, Haixu, and Foster, Patricia L
- Description:
- Excel file format (xlsx)
- Keyword:
- evolution, mutation accumulation, and neutral mutation
- Citation to related publication:
- Title:
- List of base-pair substitutions in "The symmetrical pattern of base-pair substitutions rates across the chromosome in Escherichia coli has multiple causes"
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- Creator:
- Lorenz, Tierney K, Worthman, Carol M, and Vitzthum, Virginia J
- Description:
- There are two files: a README describing the main data file, and a main data file. The main data file is plain ASCII, tab delimited, with header comments.
- Citation to related publication:
- Title:
- Data set for article "Links among inflammation, sexual activity and ovulation: Evolutionary trade-offs and clinical implications"
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- Creator:
- Benard, Stephen, Berg, Mark, and Mize, Trent
- Description:
- This collection includes data, code, zTree files used to conduct the experiment, and the experimental protocol.
- Keyword:
- experimental social psychology, social exchange, social dilemmas, prosocial behavior, power processes, and intergroup conflict
- Citation to related publication:
- Title:
- Does Aggression Deter or Invite Reciprocal Behavior? Considering Coercive Capacity
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- Creator:
- Rutkowski, Leslie, Svetina, Dubravka, and Liaw, Yuan-Ling
- Description:
- This is supplementary material, including appendices, data, and syntax to reproduce all empirical and simulation results.
- Keyword:
- multiple-groups models, ordinal variables, collapsing categories, and model fit
- Citation to related publication:
- Title:
- The Effects of Collapsing Ordered Categorical Variables on Tests of Measurement Invariance
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- Creator:
- Donnellan, Andrea, Lyzenga, Gregory, Wang, Jun, Pierce, Marlon, and Goulet, Christine
- Description:
- n/a
- Citation to related publication:
- www.geo-gateway.org
- Title:
- High-resolution Targeted 3D Imaging Postseismic Products of the Ridgecrest M6.4 and M7.1 Earthquake Sequence
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- Creator:
- Kaiyuan, Liu and Haixu, Tang
- Description:
- n/a
- Keyword:
- Spectrum Prediction, Tandem Mass Spectra, and Deep Neural Network
- Citation to related publication:
- http://www.predfull.com/datasets
- Title:
- Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
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- Creator:
- Thibos, Larry N.
- Description:
- These matlab files were produced by a Macintosh computer running Matlab version 2015. Files with the extension *.m are unformatted text files that can be opened with any text editor. They are Matlab scripts and functions that can be opened and executed by Matlab. Files with the extension *.mat are binary data files that can be opened only by Matlab. These Matlab files are intended for readers of the monograph “Fourier Analysis for Beginners” who wish to review numerical examples and exercises mentioned in the text. The full text of the book can be downloaded at http://hdl.handle.net/2022/21365 .
- Keyword:
- Quantitative Methods, Vision Research, Fourier Analysis, and Matlab
- Citation to related publication:
- http://hdl.handle.net/2022/21365
- Title:
- Matlab Files for Fourier Analysis for Beginners Matlab Files for Quantitative Methods for Vision Research Course
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- Creator:
- McLaughlin, Patrick I., Bancroft, Alyssa M., and Johnson, Matthew R.
- Description:
- The Bedrock Geologic Map of the Southern Half of the Knox 30- X 60-Minute Quadrangle was created to provide digital access to the bedrock geology of southern half of the Knox quadrangle in northern Indiana. This geodatabase presents basic bedrock geological information that contributes to the characterization of potential mineral resources and bedrock aquifer systems. The data are synthesized from archived public domain geological data obtained from many different sources, original data obtained from fieldwork conducted by the authors, and contract drilling supported by project funds. Archive data sources include petroleum-well records, water-well records, refraction seismic surveys, and the geological literature. Project data includes measurements from quarry exposures, drill cores, drill cuttings, geophysical logs, chemostratigraphic analysis via portable X-ray fluorescence and stable isotope ratio mass spectrometry, conodont biostratigraphy, and horizontal-to-vertical spectral ratio geophysical surveys. This database is, in large part, the result of a cooperative mapping agreement between the U.S. Geological Survey (USGS) and the Indiana Geological and Water Survey through the STATEMAP program of the USGS.
- Keyword:
- Indiana Geological and Water Survey (IGWS), formation, bedrock, member, Devonian, Silurian, stratigraphy, Antrim Shale, Muscatatuck Group, Traverse Formation, Detroit River Formation, Wabash Formation, and Liston Creek Limestone Member
- Citation to related publication:
- Indiana Geological Survey (IGS), 2013a, BEDROCK_SURFACE_250K_IGS_IN.SHP--Bedrock surface contours of Indiana: 1:250,000, line shapefile. - https://maps.indiana.edu/metadata/Geology/Bedrock_Surface_Contours.html Indiana Geological Survey (IGS), 2013b, Petroleum Database Management System [Microsoft SQL server database]. - https://igws.indiana.edu/pdms/WellSearch.cfm
- Title:
- Bedrock Geologic Map of the Southern Half of the Knox 30- X 60-Minute Quadrangle, Indiana
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- Creator:
- Antinao, J. L. and Rupp, R. F.
- Description:
- The Quaternary Geology of the Indiana Portion of the Eastern Extent of the South Bend 30- x 60-Minute Quadrangle was created to provide digital access to the Quaternary geology of the eastern extent of the South Bend 30- x 60-minute quadrangle in Indiana. This geodatabase presents basic Quaternary geological information that contributes to the development of a three-dimensional framework of the state of Indiana. The data are synthesized from archived public domain geological data obtained from many different sources, original data obtained from fieldwork conducted by the authors, and contract drilling supported by project funds. Archive data sources include water-well records, refraction seismic surveys, borehole descriptions and geophysical logs, and the geological literature. Project data includes observations and measurements from drilled and sampled boreholes and estimated bedrock depths from analysis of horizontal-vertical spectral ratios (HVSR) seismic measurements. This database is, in large part, the result of a cooperative mapping agreement between the U.S. Geological Survey (USGS) and the Indiana Geological and Water Survey through the STATEMAP program of the USGS.
- Keyword:
- Indiana Geological and Water Survey (IGWS), IGWS, formation, quaternary, surficial, Wedron Group, Martinsville Formation, Atherton Formation, Wadsworth Formation, Haeger Formation, Lemont Formation, Elkhart Formation, Yorkville Member, Batestown Member, Late Pleistocene, and Holocene
- Citation to related publication:
- Antinao, J. L., and Rupp, R. F., 2021, Quaternary geology of the Indiana portion of the eastern extent of the South Bend 30- x 60-minute quadrangle: Indiana Geological and Water Survey, Indiana Journal of Earth Sciences, v. 3, scale 1:100,000. doi: 10.14434/ijes.v3i0.31698
- Title:
- Quaternary Geology of the Indiana Portion of the Eastern Extent of the South Bend 30- x 60-Minute Quadrangle
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- Creator:
- Lewis, Jared C., Roux, Benoît, Li, Ying, and Upp, David
- Description:
- To gain insight into how the POP scaffold might give rise to the observed ArM selectivity, molecular dynamics simulations were conducted on models of 5-G that involved different starting coordination states of dirhodium cofactor 1. Three starting coordination states (5-G apo, 5-G with parameterized Rh-His bond, 5-G without Rh-His bond) were studied. The initial structure of 5-G apo was constructed from the crystal structure of POP, with the following amino acids mutations made using VMD17: S477F/E104A/F146A/K199A/D202A/S301G/G99S/Y326H/Q98P/S99H/V71G/E283G. The 5-G with Rh-His and 5-G without Rh-His bond models were constructed by mutating S477Z (Z is azidophenylalanine, where dirhodium cofactor 1 covalently links to the protein), which is the only other mutation from 5-G apo. No other changes where made to the model without a Rh-His bond. The Rh-His model contains a parameterized H326 bond to one of the dirhodium atoms, as shown in Figure 2D. MD simulations were performed for the 5-G apo, with Rh-His and no Rh-His POP enzymes. All three structures were bathed in a 0.15M KCl solution using the Solution Builder Module in CHARMM-GUI.18 These systems were roughly 100 100 100 Å3 in dimension and contained ~ 110,000 atoms. The periodic boundary conditions were counted using the particle-mesh Ewald method with an automatic generated grid size. Once the simulation systems were generated, they were subjected to equilibration at 358.15 K. The system was first equilibrated in an NVT ensemble for 10 ns. The equilibration simulations were performed using NAMD2.14 GPU acceleration version package19 on Nvidia’s P100 GPUs. After equilibration, the systems were simulated for 1000 ns each in an NPT ensemble with temperature set to 358.15 K and the isotropic pressure set to 1 atm. Langevin thermostats with a damping coefficient of 1 ps-1 were used to keep the temperature constant. The cutoff of the van der Waals interactions and short-range electrostatic interactions were set to ~25 Å as suggested by the guesser script. The additive C36 force field was used in all the simulations performed here.20,21,22,23 The force field parameters for the covalently linked dirhodium cofactor 1 were generated using the GAAMP server.24
- Citation to related publication:
- Title:
- 5-G MD Simulations