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- Creator:
- Pan, Ruiguang, Gysi, Alexander, Migdisov, Artas, Gong, Lei, Lu, Peng, and Zhu, Chen
- Description:
- Rare Earth Elements (REE) phosphates (monazite, xenotime, and rhabdophane) are critical REE-bearing minerals typically formed in hydrothermal and magmatic ore deposits. The ther-modynamic properties of those REE minerals are crucial to understanding the solubility, speciation, and transport of REE complexes. However, the reported standard state Gibbs free energy of for-mation (∆Gof) for these minerals in the literature vary up to 25 kJ mol−1. Here, we present linear free energy relationships that allow the evaluation and estimation of the ∆Gof values at 25 °C and 1 bar for the three minerals from the ionic radius (rREE3+) and the non-solvation Gibbs energy contribution to the REE3+ aqua ion (∆Gon, REE3+): ∆Gof, monazite – 399.71 rREE3+ = 1.0059 ∆Gon, REE3+ – 2522.51; ∆Gof, xenotime – 344.08 rREE3+ = 0.9909 ∆Gon, REE3+ – 2451.53; ∆Gof, rhabdophane – 416.17 rREE3+ = 1.0067 ∆Gon, REE3+ – 2688.86. Moreover, based on the new dataset derived for REE end-members, we re-fitted the binary Margules parameter (W) from previous theoretical calculations into linear correlations: W + 0.00204 ∆Go'n, monazite = 39.3549 ∆V + 0.0641; W + 0.00255 ∆Go'n, xenotime = 25.4885 ∆V – 0.0062. The internally con-sistent thermodynamic properties of these REE phosphates are incorporated into the computer program SUPCRTBL, which is freely available at the site https://models.earth.indiana.edu.
- Citation to related publication:
- Title:
- Recommended standard thermodynamic dataset of monazite, xenotime, and rhabdophane
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- Creator:
- Gabriel Filippelli
- Description:
- Soil geochemical analysis was performed using samples from around the US. The sampling and analysis protocols differ by data source (this is available at www.mapmyenvironment.com). The data in this table is soil lead concentration in parts per million binned by municipality in which it was collected.
- Keyword:
- soil, lead, pollution
- Citation to related publication:
- 10.22541/essoar.171052566.62785448/v1
- Title:
- Soil lead concentrations for individual samples for each municipality studied; data archived and visualized at www.MapMyEnvironment.com
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- Creator:
- Laughlin, Patrick M
- Description:
- Spectroscopy data were collected on a BioTek Synergy H1 plate reader, then exported to and analyzed in Excel. 3D charts used in the manuscript were generated with OriginPro. Microscopy images are in proprietary .nd2 format of Nikon Elements software. .nd2 files were opened and processed with ImageJ. Gels were imaged on a BioRad Chemidoc.
- Keyword:
- Nucleocapsid, N-Protein, N-protein, SARS-CoV-2, COVID-19, Coronavirus, and Virus Assembly
- Citation to related publication:
- Laughlin, P. M.; Young, K.; Gonzalez-Guiterrez, G.; Wang, J. C.-Y.,; Zlotnick, A. A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation. 2024.
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Paul Farrugia
- Description:
- Paleoclimate values for Olduvai Gorge obtained through ancestral state reconstructions using a Brownian model of evolution,
- Citation to related publication:
- Title:
- Dataset 2 - Reconstructed Values
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- Creator:
- Laughlin, Patrick M
- Description:
- Spectroscopy data were collected on a BioTek Synergy H1 plate reader, then exported to and analyzed in Excel. 3D charts used in the manuscript were generated with OriginPro. Microscopy images are in proprietary .nd2 format of Nikon Elements software. .nd2 files were opened and processed with ImageJ. Gels were imaged on a BioRad Chemidoc and labeled and saved in .ai files.
- Keyword:
- Nucleocapsid, N-Protein, Liquid-liquid phase separation, and SARS-CoV-2
- Citation to related publication:
- Laughlin, P. M.; Young, K.; Gonzalez-Guiterrez, G.; Wang, J. C.-Y.,; Zlotnick, A. A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation. 2024.
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Laughlin, Patrick M
- Description:
- Spectroscopy data were collected on a BioTek Synergy H1 plate reader, then exported to and analyzed in Excel. 3D charts used in the manuscript were generated with OriginPro. Microscopy images are in proprietary .nd2 format of Nikon Elements software. .nd2 files were opened and processed with ImageJ. Gels were imaged on a BioRad Chemidoc and labeled and saved in .ai files.
- Keyword:
- Nucleocapsid
- Citation to related publication:
- Laughlin, P. M.; Young, K.; Gonzalez-Guiterrez, G.; Wang, J. C.-Y.,; Zlotnick, A. A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation. 2024.
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Laughlin, Patrick M
- Description:
- Spectroscopy data were collected on a BioTek Synergy H1 plate reader, then exported to and analyzed in Excel. 3D charts used in the manuscript were generated with OriginPro. Microscopy images are in proprietary .nd2 format of Nikon Elements software. .nd2 files were opened and processed with ImageJ. Gels were imaged on a BioRad Chemidoc and labeled and saved in .ai files.
- Keyword:
- Nucleocapsid, N-Protein, Liquid-liquid phase separation, and SARS-CoV-2
- Citation to related publication:
- Laughlin, P. M.; Young, K.; Gonzalez-Guiterrez, G.; Wang, J. C.-Y.,; Zlotnick, A. A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation. 2024.
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Laughlin, Patrick M
- Description:
- Spectroscopy data were collected on a BioTek Synergy H1 plate reader, then exported to and analyzed in Excel. 3D charts used in the manuscript were generated with OriginPro. Microscopy images are in proprietary .nd2 format of Nikon Elements software. .nd2 files were opened and processed with ImageJ. Gels were imaged on a BioRad Chemidoc.
- Keyword:
- Nucleocapsid, N-Protein, Liquid-liquid phase separation, and SARS-CoV-2
- Citation to related publication:
- Laughlin, P. M.; Young, K.; Gonzalez-Guiterrez, G.; Wang, J. C.-Y.,; Zlotnick, A. A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation. 2024.
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Laughlin, Patrick M
- Description:
- Spectroscopy data were collected on a BioTek Synergy H1 plate reader, then exported to and analyzed in Excel. 3D charts used in the manuscript were generated with OriginPro. Microscopy images are in proprietary .nd2 format of Nikon Elements software. .nd2 files were opened and processed with ImageJ. Gels were imaged on a BioRad Chemidoc.
- Keyword:
- Nucleocapsid, N-Protein, SARS-CoV-2, and Phase Separation
- Citation to related publication:
- Laughlin, P. M.; Young, K.; Gonzalez-Guiterrez, G.; Wang, J. C.-Y.,; Zlotnick, A. A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation. 2024.
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Paul Farrugia
- Description:
- This data is from the fossil assemblage excavated by the Olduvai Landscape Paleoanthropology Project from 2010 - 2014 at the Douglas Korongo site in Olduvai Gorge, Tanzania.
- Citation to related publication:
- Title:
- Dataset 1. Skeletal part profiles for OLAPP DK trenchs
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- Creator:
- Laughlin, Patrick M
- Description:
- This dataset was generated from experiments using purified materials. Experiments were designed to study phase separation of SARS-CoV-2 Nucleocapsid protein.
- Keyword:
- Nucleocapsid
- Citation to related publication:
- Title:
- Raw data for "A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation"
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- Creator:
- Collaborative Initiative on Fetal Alcohol Spectrum Disorders (CIFASD)
- Description:
- CIFASD (Collaborative Initiative on Fetal Alcohol Spectrum Disorders) is a multisite consortium supported by the National Institute on Alcohol Abuse and Alcoholism (NIAAA). The purpose of this consortium is to inform and develop effective interventions and treatment approaches for Fetal Alcohol Spectrum Disorders (FASD), through multidisciplinary research involving basic, behavioral, and clinical investigators and projects. We hope to develop an infrastructure to foster collaboration and coordinate basic, clinical, and translational research on FASD., Data were collected across multiple grant cycles spanning 2003 – present. For data from 2003-2022 (Phases 1-4), please go to https://cifasd.org/data-sharing/ to request these CIFASD data. Data from 2022 (Phase 5) and beyond are deposited into the NIAAA Data Archive ( https://www.niaaa.nih.gov/research/niaaa-data-archive). , CIFASD investigators designed and implemented the study and/or provided data but did not necessarily participate in the analysis or writing of this report. A list of CIFASD investigators and projects can be found at https://cifasd.org/research/ . , and CIFASD has received support from NIAAA under award numbers: U01AA014786, U01AA014790, U01AA014809, U01AA014812, U01AA014829, U01AA014834, U01AA014835, U01AA017120, U01AA017122, U01AA017123, U01AA017124, U01AA021651, U01AA026101, U01AA026102, U01AA026103, U01AA026104, U01AA026108, U01AA030164, U01AA030185, U01AA030187, U24AA014811, U24AA014815, U24AA014818, U24AA014828, U24AA014830, U24AA030169, UH2AA026106, UH2AA026109, UH2AA029050, UH2AA029056, UH2AA029062, and UH2AA030186.
- Keyword:
- adults, animal models, biomarkers, brain, children, cytokines, FASD, GWAS, health, intervention, neurobehavior, neuroimaging, prenatal alcohol exposure, screening, whole exome sequencing, 3D data points
- Citation to related publication:
- https://cifasd.org/data-sharing/
- Title:
- CIFASD Research Data
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- Creator:
- Booras, Elissa A
- Description:
- As part of a study to make food policy recommendations to the City of Indianapolis, this component of the study was concerned with assessing the food environment of SNAP retailers across the city. This survey was carried out to understand food access in Indianapolis, especially when such access concerns marginalized residents.
- Keyword:
- retail environment, food environment, SNAP, food access, and public health nutrition
- Citation to related publication:
- Title:
- 2021 Store Survey Dataset of SNAP Retailers in Indianapolis, IN
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- Creator:
- Booras, Elissa A
- Description:
- As part of a study to make food policy recommendations to the City of Indianapolis, this component of the study was concerned with assessing the food environment of SNAP retailers across the city. This survey was carried out to understand food access in Indianapolis, especially when such access concerns marginalized residents.
- Citation to related publication:
- Title:
- 2021 Store Survey Dataset of SNAP Retailers in Indianapolis, IN
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- Creator:
- Gorini Pereira, Felipe; Greenfield, Andrew M.; Kuennen, Matthew R.; Gillum, Trevor L.
- Description:
- Data for this research study were collected and assembled in the attached Excel file. These data were subsequently analyzed for the manuscript using GraphPad Prism version 9.0.0 (Prism, San Diego, CA) statistical software.
- Keyword:
- Hypervolemia, high intensity exercise, altitude exposure
- Citation to related publication:
- Title:
- Exercise induced plasma volume expansion lowers cardiovascular strain during 15-km cycling time-trial in acute normobaric hypoxia.
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- Creator:
- Gorini Pereira, Felipe; Greenfield, Andrew M.; Kuennen, Matthew R.; Gillum, Trevor L.
- Description:
- Data for this research study were collected and assembled in the attached Excel file. These data were subsequently analyzed for the manuscript using GraphPad Prism version 9.0.0 (Prism, San Diego, CA) statistical software.
- Keyword:
- Hypervolemia, high intensity exercise, altitude exposure
- Citation to related publication:
- Title:
- Exercise induced plasma volume expansion lowers cardiovascular strain during 15-km cycling time-trial in acute normobaric hypoxia.
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- Creator:
- Doctor, Khoshrav, McKeever, Chaundy, Phadnis, Aditya, Wu, Di, Plawecki, Martin, Nurnberger Jr, John, and Jose, Jorge V
- Description:
- The data set consists of movement kinematic data from 92 participants that are neurotypical or have certain neurodevelopmental disorders (Autism, Attention Deficit/Hyperactivity Disorder, and their comorbidity). The data is of roughly 100 trials of a reaching paradigm per participant. The raw data consists of the linear acceleration (a), the roll (R), pitch (P), and yaw (Y), and the rate of change of the roll, pitch, and yaw. Description of the data and file structure. There are three primary folders: Data, Matlab Code, and the Deep Learning Code., Data: Each folder corresponds to one participant. Inside is their motion data (sensor_data.csv) and a file describing their diagnosis and severity (diagnosis.txt). The columns of the csv are: a in x, a in y, a in z, dR/dt, dP/dt, dY/dt, R, P, Y The diagnosis.txt file contains two lines: the first is their diagnosis (ASD, ADHD, A^2, NT), the second is their severity (HF for high functioning, MF for mid functioning, LF for low functioning, and NA for not applicable)., Matlab Code: Information on how to analyze participants can be found in README.txt file within the folder. The Matlab code was written and run on MATLAB_R2023b. The signal processing toolbox is required., and Deep Learning Code: Information on how to perform the deep learning analysis can be found in README.txt file within the folder. The deep learning code is written in Python3 and relies on PyTorch.
- Keyword:
- Neurodivergent, Autism, Neurodevelopmental Disorder, Attention-Deficit/Hyperactivity Disorder, Biometric, Deep Learning, Motor deficits, kinesthetics , and Statistics
- Citation to related publication:
- K. Doctor, C. McKeever, A. Phadnis, D. Wu, J. Nurnberger Jr., M. Plawecki, & J.V. Jose. Deep learning and statistical millisecond motor assessments of neurodevelopmental disorders. Science, In Submission.
- Title:
- Deep Learning and statistical millisecond motor assessments of neurodevelopmental disorders
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- Creator:
- Doctor, Khoshrav, McKeever, Chaundy, Phadnis, Aditya, Wu, Di, Plawecki, Martin, Nurnberger Jr, John, and Jose, Jorge V
- Description:
- The data set consists of movement kinematic data from 92 participants that are neurotypical or have certain neurodevelopmental disorders (Autism, Attention Deficit/Hyperactivity Disorder, and their comorbidity). The data is of roughly 100 trials of a reaching paradigm per participant. The raw data consists of the linear acceleration (a), the roll (R), pitch (P), and yaw (Y), and the rate of change of the roll, pitch, and yaw. Description of the data and file structure. There are three primary folders: Data, Matlab Code, and the Deep Learning Code., Data: Each folder corresponds to one participant. Inside is their motion data (sensor_data.csv) and a file describing their diagnosis and severity (diagnosis.txt). The columns of the csv are: a in x, a in y, a in z, dR/dt, dP/dt, dY/dt, R, P, Y The diagnosis.txt file contains two lines: the first is their diagnosis (ASD, ADHD, A^2, NT), the second is their severity (HF for high functioning, MF for mid functioning, LF for low functioning, and NA for not applicable)., Matlab Code: Information on how to analyze participants can be found in README.txt file within the folder. The Matlab code was written and run on MATLAB_R2023b. The signal processing toolbox is required., and Deep Learning Code: Information on how to perform the deep learning analysis can be found in README.txt file within the folder. The deep learning code is written in Python3 and relies on PyTorch.
- Keyword:
- Neurodivergent, Autism, Neurodevelopmental Disorder, Attention-Deficit/Hyperactivity Disorder, Biometric, Deep Learning, Motor deficits, kinesthetics , and Statistics
- Citation to related publication:
- K. Doctor, C. McKeever, A. Phadnis, D. Wu, J. Nurnberger Jr., M. Plawecki, & J.V. Jose. Deep learning and statistical millisecond motor assessments of neurodevelopmental disorders. Science, In Submission.
- Title:
- Deep Learning and statistical millisecond motor assessments of neurodevelopmental disorders
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- Creator:
- Gabler, Mikaela C; Martin, Bruce J; Johnson, Blair D; Schlader, Zachary J; and Chapman, Robert F
- Description:
- The purpose of this study was to examine how IMW affects the sensory and affective components of dyspnea, exercise performance, and NIRS-derived metaboreflex effects during a cycling time to exhaustion test. Additionally, to augment the ventilatory response for better elucidation of the cardiorespiratory effects of IMW, we added hypoxia as an intervention. Using both normoxic and hypoxic conditions, our hypotheses were: 1) both sensory and affective components of dyspnea would be attenuated following IMW in each condition, 2) the extent of skeletal muscle deoxygenation (i.e., a NIRS-derived surrogate for the metaboreflex) in the leg would be reduced after IMW in each condition, and 3) participants’ time to exhaustion would be prolonged following IMW in each condition.
- Keyword:
- altitude, breathlessness, dyspnea, metaboreflex, respiratory
- Citation to related publication:
- Title:
- Effects of inspiratory muscle warm-up on perceptual, physiological, and performance outcomes during high-intensity exercise in normoxia and hypoxia
-
- Creator:
- Gabler, Mikaela C; Martin, Bruce J; Johnson, Blair D; Schlader, Zachary J; and Chapman, Robert F
- Description:
- The purpose of this study was to examine how IMW affects the sensory and affective components of dyspnea, exercise performance, and NIRS-derived metaboreflex effects during a cycling time to exhaustion test. Additionally, to augment the ventilatory response for better elucidation of the cardiorespiratory effects of IMW, we added hypoxia as an intervention. Using both normoxic and hypoxic conditions, our hypotheses were: 1) both sensory and affective components of dyspnea would be attenuated following IMW in each condition, 2) the extent of skeletal muscle deoxygenation (i.e., a NIRS-derived surrogate for the metaboreflex) in the leg would be reduced after IMW in each condition, and 3) participants’ time to exhaustion would be prolonged following IMW in each condition.
- Keyword:
- altitude, breathlessness, dyspnea, metaboreflex, respiratory
- Citation to related publication:
- Title:
- Effects of inspiratory muscle warm-up on perceptual, physiological, and performance outcomes during high-intensity exercise in normoxia and hypoxia