The evigene_daphnia_magna2014 archive package contains a complete, reconstructed gene set of Daphnia magna, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Daphnia magna reconstructed with EvidentialGene
The evigene_shrimp_penamon2013 archive package contains a complete, reconstructed gene set of Penaeus monodon, tiger shrimp, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Penaeus monodon, tiger shrimp reconstructed with EvidentialGene
Accompanying dataset to the protocol published in Methods in Molecular Biology. Click on the PURL link below in the "External Files" section to download the dataset.
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Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite
The evigene_mosquito_anoalb2016 archive package contains a complete, reconstructed gene set of Anopheles albimanus, mosquito, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Anopheles albimanus, mosquito reconstructed with EvidentialGene
The evigene_pig2018 download contains a complete, reconstructed gene set of model animal Pig, Sus scrofa, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of the Pig, Sus scrofa, reconstructed with EvidentialGene
The evigene_killifish2014 archive package contains a complete, reconstructed gene set of Fundulus heteroclitus, atlantic killifish, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Fundulus heteroclitus, atlantic killifish reconstructed with EvidentialGene
Download the software applications used for the 2016 Student Cluster Competition by clicking the URLs below: Gromacs (6 MB); Paraview (6 GB); ParConnect (800 MB); Distributed Password Auditing/Recovery (125 MB). ParConnect sequence data were produced by the US Department of Energy Joint Genome Institute http://www.jgi.doe.gov/ in collaboration with the user community. Note that download times may vary.
The evigene_daphnia_galeata2016 archive package contains a complete, reconstructed gene set of Daphnia galeata, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Daphnia galeata reconstructed with EvidentialGene
The evigene_tick_rhipic2014 archive package contains a complete, reconstructed gene set of Rhipicephalus pulchellus, zebra tick, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Rhipicephalus pulchellus, zebra tick reconstructed with EvidentialGene
The evigene_whitefly_bemitab2017 archive package contains a complete, reconstructed gene set of Bemisia tabaci, whitefly, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Bemisia tabaci, whitefly reconstructed with EvidentialGene
The evigene_mosquito_aedes2016 archive package contains a complete, reconstructed gene set of Aedes aegypti, mosquito, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Aedes aegypti, mosquito reconstructed with EvidentialGene
Data are contained in a single zip file. Contents of the zip file are in a single directory with the name Supplement. That directory contains a pdf file called README.pdf describing the total contents. and Full Author List: Gary L. Pavlis, Department of Geological Sciences, 1001 East 10th Street, Indiana University, Bloomington, IN 47405 ( pavlis@indiana.edu); Karin Sigloch, Department of Earth and Environmental Sciences, Ludwig-Maximilians-Universitat, Theresienstrasse 41, D-80333, Munich, Germany ( sigloch@geophysik.uni-muenchen.de ); Scott Burdick, Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts ( sburdick@mit.edu); Matthew J. Fouch, Department of Terrestrial Magnetism, Carnegie Institution of Washington,
5241 Broad Branch Road, NW, Washington, DC 20015 ( fouch@dtm.ciw.edu ); Frank Vernon, Institute of Geophysics and Planetary Physics (IGPP), University of California, San Diego, La Jolla, CA ( flvernon@ucsd.edu )
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"Unraveling the geometry of the Farallon Plate: Synthesis of three-dimensional imaging results from the USArray", electronic supplement
The evigene_daphnia_pulex2010 archive package contains a complete, reconstructed gene set of Daphnia pulex, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Daphnia pulex reconstructed with EvidentialGene
The evigene_seaurchin_lytvar2017 archive package contains a complete, reconstructed gene set of Lytechinus variegatus, green sea urchin, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Lytechinus variegatus, green sea urchin reconstructed with EvidentialGene
The evigene_cacao2013 archive package contains a complete, reconstructed gene set of Theobroma cacao, chocolate tree, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Theobroma cacao, chocolate tree reconstructed with EvidentialGene
The evigene_tick_ixoscap2014 archive package contains a complete, reconstructed gene set of Ixodes scapularis, deer tick, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Ixodes scapularis, deer tick reconstructed with EvidentialGene
Click on the PURL link below in the "Link(s) to data and video for this item" section to download the dataset.
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Data for "Spatially variable increase in rock uplift in the northern U.S. Cordillera recorded in the distribution of river knickpoints and incision depths"
Kindly report errors to Professor Chen Zhu ( supcrt@indiana.edu). Tutorials, corrections, and updates may be found at Professor Zhu’s research web site https://hydrogeochem.earth.indiana.edu. Users of this program should also acknowledge and cite these articles:
Parkhurst, D.L., Appelo, C., 2013. Description of input and examples for PHREEQC version 3--A computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations. Techniques and Methods 6-A43, U.S. Geological Survey, Reston, VA., 497.
Johnson, J.W., Oelkers, E.H. and Helgeson, H.C. (1992) SUPCRT92 - A software package for calculating the standard molal thermodynamic properties of minerals, gases, aqueous species, and reactions from 1-bar to 5000-bar and 0°C to 1000°C. Computer & Geosciences 18:899-947.
Zimmer, K., Zhang, Y., Lu, P., Chen, Y., Zhang, G., Dalkilic, M., Zhu, C., 2016. SUPCRTBL: A revised and extended thermodynamic dataset and software package of SUPCRT92. Computer & Geosciences 90, 97-111.
This work was partly supported by NSF grant EAR-19267343 and the Office of the Vice Provost for Research of Indiana University.
The evigene_beetle_tribolium2014 archive package contains a complete, reconstructed gene set of Tribolium castaneum, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Tribolium castaneum reconstructed with EvidentialGene
The evigene_zebrafish2017 archive package contains a complete, reconstructed gene set of Danio rerio, zebrafish, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents.
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Genes of Danio rerio, zebrafish reconstructed with EvidentialGene
The evigene_pinetree2013 archive package contains a complete, reconstructed gene set of Pinus taeda, loblolly pine tree, produced with EvidentialGene methods. This file set includes gene sequences, annotations, analyses and summary documents. Click on the PURL link below in the "External Files" section to download the dataset.
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Genes of Pinus taeda, loblolly pine tree reconstructed with EvidentialGene
