This dataset contains confocal imaging and single-cell data used to characterize the developmental trajectories of Arabidopsis lateral and median nectaries. The repository includes:
*3D cell tracking: 3D segmentation and quantitative imaging tracking to characterize the developmental patterns of lateral and median nectaries. The data highlights differences in cell expansion, proliferation, and volumetric growth of the nectary epidermis and nectary sub-epidermal cells/parenchyma cells.
*Single-Cell transcriptomics: Gene expression and marker gene analysis identifying nectary-specific cell clusters.
Title:
Live imaging confocal data, marker genes and nectary cell trajectory datasets.
In this study, we computationally analyzed published structures of Hepatitis B virus core protein (HBc) bound with different core protein assembly modulators (CAMs) that interfere with HBV assembly. We focused on comparing the difference in CAM binding between two mutations of HBc, one that forms flat sheets, and one that forms icosahedra similar to the wild type virus capsid. We did this by aligning all currently published HBc-CAM structures by their CAM binding pockets. This allowed us to both quantitatively and qualitatively compare the CAM binding pockets of these two different structure types. We find that there are critical differences in the angle of interaction, capsid orientation angle, CAM pocket shapes and sizes, and CAM interacting residues between icosahedral and sheet based HBc structures.
Title:
Assembly-active and -inactive forms of HBV capsid protein provide distinctly different binding sites for capsid assembly modulators
Polly, P. D. 2012. Phylogenetics for Mathematica. Version 2.1. Department of Geological Sciences, Indiana University: Bloomington, Indiana. http://mypage.iu.edu/~pdpolly/Software.html
Initial Jetstream Featured image. Based on CentOS 6 (6.7) Development. Patched up to date as of 3/29/16, turned off the following from default startup in GNOME: Bluetooth Power Manager Volume Control PulseAudio Package Manager
Date derived from a sample of OCLC records. Data was collected for research published by "Cataloging & Classification Quarterly." Full citation of the paper is: Park, Taemin Kim & Andrea M. Morrison (2017). The Nature and Characteristics of Bibliographic Relationships in RDA Cataloging Records in OCLC at the Beginning of RDA Implementation. Cataloging & Classification Quarterly, vol. 55, issue 6. http://www.tandfonline.com/doi/full/10.1080/01639374.2017.1319451. A post-print of the paper is available here: http://hdl.handle.net/2022/21657.
Zhang YL, Hu B, Teng Y, Tu K, Zhu C (2019) A library of BASIC scripts of reaction rates for geochemical modeling using PHREEQC. Computers & Geosciences
Title:
A library of BASIC scripts of rate equations for geochemical modeling using PHREEQC
List of base-pair substitutions in "The symmetrical pattern of base-pair substitutions rates across the chromosome in Escherichia coli has multiple causes"
