Work Description

Title: Tutorial Files for CAFE5 Open Access Deposited

http://creativecommons.org/licenses/by/4.0/
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Abstract
  • In this tutorial we provide you with instructions on how to generate a reasonable phylogeny using CAFE. We start by asking you to download a set of mammalian FASTA files, and derive a potential mammal phylogeny from that.
Methodology
  • Tutorial files for running the CAFE5 phylogenetics application
Description
  • Here we present CAFE 5, a completely re-written software package with numerous performance and user-interface enhancements over previous versions. These include improved support for multithreading, the explicit modelling of rate variation among families using gamma-distributed rate categories, and command-line arguments that preclude the use of accessory scripts.
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Contact information
Funding agency
  • National Science Foundation (NSF)
Keyword
Citations to related material
  • 10.1093/bioinformatics/btaa1022
Publisher
Resource type
Last modified
  • 01/13/2023
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License
To Cite this Work:
Fulton, B. Tutorial Files for CAFE5 [Data set]. Indiana University - DataCORE.

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Files (Count: 3; Size: 1.77 GB)

Thumbnail Title Original Upload Last Modified File Size Access Actions
blast_output.tar.gz 2023-01-13 2023-01-13 1.43 GB Open Access
mcl_output.tar.gz 2023-01-13 2023-01-13 230 MB Open Access
twelve_spp_proteins.tar.gz 2023-01-13 2023-01-13 122 MB Open Access

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