Phylogenetics for Mathematica (Ver. 2.1)

Work Description

Attribute	Value
Abstract	This add-in package for Mathematica performs basic phylogenetic functions, including reading and drawing Newick format trees, calculating phylogenetically independent contrasts, reconstructing ancestral values for continuous traits, performing random walks, and simulating continuous traits on phylogenetic trees. The file is a ".m" file, which can be imported into Mathematica 6.0 and later (functions do not work in earlier versions of Mathematica). Install using the "Install" item on the "File" menu. Once installed, you must load the package like any other with the line "<<PollyPhylogenetics", using either this suggested name or another.
Methodology	n/a
Description	n/a
Creator	Polly, P. David
Depositor	dapscott@iu.edu
Contact information	pdpolly@iu.edu
Keyword	Phylogenetics Ancestral Node Reconstruction Newick Trees
Date coverage	2012-07-25
Citations to related material	Polly, P. D. 2012. Phylogenetics for Mathematica. Version 2.1. Department of Geological Sciences, Indiana University: Bloomington, Indiana. http://mypage.iu.edu/~pdpolly/Software.html
Publisher	IU Scholarworks
Resource type	Software
Last modified	09/28/2020
Language	English
License	http://creativecommons.org/licenses/by-nc-sa/3.0/

To Cite this Work:
Polly, P. Phylogenetics for Mathematica (Ver. 2.1) [Data set]. Indiana University - DataCORE.

Title	Original Upload	Last Modified	File Size	Access	Actions
PollyPhylogenetics2.1.m	2020-09-28	2020-09-28	25.6 KB	Open Access	View Details Download
Guide_to_PollyPhylogenetics_2.1.pdf	2020-09-28	2020-09-28	207 KB	Open Access	View Details Download
PollyPhylogenetics2.0.txt	2020-09-28	2020-09-28	24.2 KB	Open Access	View Details Download
Guide_to_PollyPhylogenetics_2.0.pdf	2020-09-28	2020-09-28	207 KB	Open Access	View Details Download

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