Work Description

Title: Phylogenetics for Mathematica (Ver. 2.1)

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Abstract
  • This add-in package for Mathematica performs basic phylogenetic functions, including reading and drawing Newick format trees, calculating phylogenetically independent contrasts, reconstructing ancestral values for continuous traits, performing random walks, and simulating continuous traits on phylogenetic trees. The file is a ".m" file, which can be imported into Mathematica 6.0 and later (functions do not work in earlier versions of Mathematica). Install using the "Install" item on the "File" menu. Once installed, you must load the package like any other with the line "<<PollyPhylogenetics", using either this suggested name or another.
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  • 2012-07-25
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Last modified
  • 06/01/2026
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To Cite this Work:
Polly, P. Phylogenetics for Mathematica (Ver. 2.1) [Data set]. Indiana University - DataCORE.

Files (Count: 4; Size: 463 KB)

Thumbnail Title Original Upload Last Modified File Size Access Actions
PollyPhylogenetics2.1.m PollyPhylogenetics2.1.m 2020-09-28 2020-09-28 25.6 KB Open Access
Guide_to_PollyPhylogenetics_2.1.pdf Guide_to_PollyPhylogenetics_2.1.pdf 2020-09-28 2020-09-28 207 KB Open Access
PollyPhylogenetics2.0.txt PollyPhylogenetics2.0.txt 2020-09-28 2020-09-28 24.2 KB Open Access
Guide_to_PollyPhylogenetics_2.0.pdf Guide_to_PollyPhylogenetics_2.0.pdf 2020-09-28 2020-09-28 207 KB Open Access

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