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Title: Ubuntu 14.04.3 Deployable VM Image for Phylogenetics and RADseq Open Access Deposited

http://creativecommons.org/licenses/by/3.0/
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Abstract
  • Jetstream image based on Ubuntu 14.04.3 including multiple common software packages for processing and phylogenetic analysis of RADseq data. v2.0 as of February 27, 2017: Added numerous packages, as well as environmental modules (e.g. "module avail") for package management. Added software: ABYSS, Anadonda (Python 2.7), Anaconda (Python 3.6), BBmap, BEAST, BEDtools, Bowtie2, BWA, CD-HIT, EXaML, fineRADstructure, HyDE, IpyRAD, LINKS, Migrate-N, MrBayes, MUSCLE, NCBI-BLAST+, OPERA-LG, PartitionFinder2, PEAR, pyRAD, RAxML, R (3.3.2 + common genetics packages), R (3.1.1), SAMtools, SOAPdenovo2, Structure, Trimmomatic, Vsearch.
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  • 06/20/2024
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Date issued
  • 2017-2-27
To Cite this Work:
Ubuntu 14.04.3 Deployable VM Image for Phylogenetics and RADseq [Data set]. Indiana University - DataCORE.

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phylogentetics.raw.gz phylogentetics.raw.gz 2024-07-20 2024-07-20 Open Access

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