This dataset contains confocal imaging and single-cell data used to characterize the developmental trajectories of Arabidopsis lateral and median nectaries. The repository includes:
*3D cell tracking: 3D segmentation and quantitative imaging tracking to characterize the developmental patterns of lateral and median nectaries. The data highlights differences in cell expansion, proliferation, and volumetric growth of the nectary epidermis and nectary sub-epidermal cells/parenchyma cells.
*Single-Cell transcriptomics: Gene expression and marker gene analysis identifying nectary-specific cell clusters.
Title:
Live imaging confocal data, marker genes and nectary cell trajectory datasets.
In this study, we computationally analyzed published structures of Hepatitis B virus core protein (HBc) bound with different core protein assembly modulators (CAMs) that interfere with HBV assembly. We focused on comparing the difference in CAM binding between two mutations of HBc, one that forms flat sheets, and one that forms icosahedra similar to the wild type virus capsid. We did this by aligning all currently published HBc-CAM structures by their CAM binding pockets. This allowed us to both quantitatively and qualitatively compare the CAM binding pockets of these two different structure types. We find that there are critical differences in the angle of interaction, capsid orientation angle, CAM pocket shapes and sizes, and CAM interacting residues between icosahedral and sheet based HBc structures.
Title:
Assembly-active and -inactive forms of HBV capsid protein provide distinctly different binding sites for capsid assembly modulators
Polly, P. D. 2012. Phylogenetics for Mathematica. Version 2.1. Department of Geological Sciences, Indiana University: Bloomington, Indiana. http://mypage.iu.edu/~pdpolly/Software.html
Initial Jetstream Featured image. Based on CentOS 6 (6.7) Development. Patched up to date as of 3/29/16, turned off the following from default startup in GNOME: Bluetooth Power Manager Volume Control PulseAudio Package Manager
Date derived from a sample of OCLC records. Data was collected for research published by "Cataloging & Classification Quarterly." Full citation of the paper is: Park, Taemin Kim & Andrea M. Morrison (2017). The Nature and Characteristics of Bibliographic Relationships in RDA Cataloging Records in OCLC at the Beginning of RDA Implementation. Cataloging & Classification Quarterly, vol. 55, issue 6. http://www.tandfonline.com/doi/full/10.1080/01639374.2017.1319451. A post-print of the paper is available here: http://hdl.handle.net/2022/21657.
Zhang YL, Hu B, Teng Y, Tu K, Zhu C (2019) A library of BASIC scripts of reaction rates for geochemical modeling using PHREEQC. Computers & Geosciences
Title:
A library of BASIC scripts of rate equations for geochemical modeling using PHREEQC
List of base-pair substitutions in "The symmetrical pattern of base-pair substitutions rates across the chromosome in Escherichia coli has multiple causes"
Polly, P.D. and A. Goswami. 2010. Modularity for Mathematica, Version 1.0. Goswami, A. & Polly, P. D. 2010 Methods for studying morphological integration, modularity and covariance evolution. In Quantitative Methods in Paleobiology. Paleontological Society Short Course, October 30th, 2010, vol. The Paleontological Society Papers (ed. J. Alroy & G. Hunt), pp. 213-243. Chicago: The Paleontological Society.
Dataset for "Comparing Transaction Logs to ILL requests to Determine the Persistence of Library Patrons In Obtaining Materials" article.
Excel file contains all data in four worksheets
Zip file contains four csv files, one for each worksheet:
- Comparing Transaction Logs to ILL - 2016 ILL Raw Data.csv
- Comparing Transaction Logs to ILL - 2015 ILL Raw Data.csv
- Comparing Transaction Logs to ILL - 2016 Zero Search Raw Data.csv
- Comparing Transaction Logs to ILL - 2015 Zero Search Raw Data.csv
Polly, P. D. 2012. Geometric morphometrics for Mathematica. Version 9.0. Department of Geological Sciences, Indiana University: Bloomington, Indiana. http://mypage.iu.edu/~pdpolly/Software.html
Title:
Geometric Morphometrics for Mathematica (Ver. 9.0)
Data transcribed from authority records matching relevant search criteria submitted to OCLC. MARC records retrieved July 11, 2017 via OCLC Connexion Client. Data entry completed September, 12, 2017. Data entered in exact transcription, retaining any errors or typos found in the retrieved records.
There are two files: a README describing the main data file, and a main data file.
The main data file is plain ASCII, tab delimited, with header comments.
Title:
Data set for article "Links among inflammation, sexual activity and ovulation: Evolutionary trade-offs and clinical implications"
Data was compiled from several publicly available sources of scientific and educational data (NSF Awards Search, SciSciNet data lake, Web of Science broad disciplinary, Lightcast skills, O*Net Content Model Reference) with details and links available in the dataset readme. Text from these data sources was processed using NLP methods in a series of Python and R scripts, available with full description in the dataset repository at
https://github.com/monica-marion/Interdisciplinary-Training-Grants-Collection.
edgesPort.csv: is the processed data derived from https://www.soundtoll.nl/, I cleaned up the data and removed artifacts (such as unclear port names etc...). The exact cleaning process can be found in the R files. The following variables are included:
from_port: port (i) the passage comes FROM
to_port: port (j) the passage is going TO
year: year the relationship is captured
Note: edge weights (frequency of passages between port pairs within each time period) are constructed from the edgelist within the str_net_eda.r file and are not present in edgesPort.csv.
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db.r: This file constructs the SQL database from the raw files. It is not directly used in the edgelist construction. I am including it for transparency sake.
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queries.r: This file performs SQL queries to construct the edgelist.
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str_net_eda.r: This file conducts the network topology used in a forthcoming publication: The Structure of European Maritime Trade: A Network Topology of the Sound Toll Registers, 1670-1857 (sent out for review)
The purpose of this study was to examine how IMW affects the sensory and affective components of dyspnea, exercise performance, and NIRS-derived metaboreflex effects during a cycling time to exhaustion test. Additionally, to augment the ventilatory response for better elucidation of the cardiorespiratory effects of IMW, we added hypoxia as an intervention. Using both normoxic and hypoxic conditions, our hypotheses were: 1) both sensory and affective components of dyspnea would be attenuated following IMW in each condition, 2) the extent of skeletal muscle deoxygenation (i.e., a NIRS-derived surrogate for the metaboreflex) in the leg would be reduced after IMW in each condition, and 3) participants’ time to exhaustion would be prolonged following IMW in each condition.
Quantitative measurement of intact alpha-synuclein proteoforms from post-mortem control and Parkinson's disease brain tissue by intact protein mass spectrometry
