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- Creator:
- Schroer, Frank G., Jung, Ilyoung, Burkle, Thomas W., Lyons, Jack B., Van Vlack, Joseph W., Ezuma, Joseph, and Richerme, Philip
- Description:
- "Figure" folders contain all raw data and analysis files used to generate the plots in the manuscript. "TrapDesign" folder contains all CAD models, drawings, and materials needed to construct the ion trap described in the manuscript.
- Keyword:
- Ion Traps, Quantum Simulation
- Citation to related publication:
- Nature Scientific Reports, in press
- Title:
- Dataset and Assembly Files for "A versatile laser-machined rf trap for arrays of 100+ ions"
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- Creator:
- Narlock, Mikala R., Gandrapu, Lahari, and Fridmanski, Ethan
- Description:
- Data are provided in a CSV. The attached PDF provides details on how the data were collected.
- Title:
- Dataset Sharing in Institutional Data Repositories: Data from 2020-2026
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- Creator:
- Scott, Liam W.
- Description:
- In this study, we computationally analyzed published structures of Hepatitis B virus core protein (HBc) bound with different core protein assembly modulators (CAMs) that interfere with HBV assembly. We focused on comparing the difference in CAM binding between two mutations of HBc, one that forms flat sheets, and one that forms icosahedra similar to the wild type virus capsid. We did this by aligning all currently published HBc-CAM structures by their CAM binding pockets. This allowed us to both quantitatively and qualitatively compare the CAM binding pockets of these two different structure types. We find that there are critical differences in the angle of interaction, capsid orientation angle, CAM pocket shapes and sizes, and CAM interacting residues between icosahedral and sheet based HBc structures.
- Title:
- Assembly-active and -inactive forms of HBV capsid protein provide distinctly different binding sites for capsid assembly modulators
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- Creator:
- Gómez-Felipe, Andrea, Wong, Kaitlyn , Johnson, Aaralyn, Kosty, Melissa, Long, Jeffrey, Kierzkowski, Daniel, and Nikolov, Lachezar A
- Description:
- This dataset contains confocal imaging and single-cell data used to characterize the developmental trajectories of Arabidopsis lateral and median nectaries. The repository includes: *3D cell tracking: 3D segmentation and quantitative imaging tracking to characterize the developmental patterns of lateral and median nectaries. The data highlights differences in cell expansion, proliferation, and volumetric growth of the nectary epidermis and nectary sub-epidermal cells/parenchyma cells. *Single-Cell transcriptomics: Gene expression and marker gene analysis identifying nectary-specific cell clusters.
- Title:
- Live imaging confocal data, marker genes and nectary cell trajectory datasets.
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- Creator:
- Sizek, Herbert
- Description:
- The Concordant Crop Sequence Boundaries improves the stabilty and accuracy of the USDA Crop Sequence Boundaries by altering the agglomeration method to be based on the simiarilty of crop sequences rather than on the longest shared boundary. This work aims to provide accurate temporal field boundaries for the Contiguous United States through time.
- Keyword:
- Agriculture, Field Boundaries, and Land Cover
- Title:
- concordant Crop Sequence Boundaries
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- Creator:
- Fridmanski, Ethan
- Description:
- edgesPort.csv: is the processed data derived from https://www.soundtoll.nl/, I cleaned up the data and removed artifacts (such as unclear port names etc...). The exact cleaning process can be found in the R files. The following variables are included: from_port: port (i) the passage comes FROM to_port: port (j) the passage is going TO year: year the relationship is captured Note: edge weights (frequency of passages between port pairs within each time period) are constructed from the edgelist within the str_net_eda.r file and are not present in edgesPort.csv. --- db.r: This file constructs the SQL database from the raw files. It is not directly used in the edgelist construction. I am including it for transparency sake. --- queries.r: This file performs SQL queries to construct the edgelist. --- str_net_eda.r: This file conducts the network topology used in a forthcoming publication: The Structure of European Maritime Trade: A Network Topology of the Sound Toll Registers, 1670-1857 (sent out for review)
- Keyword:
- network analysis, Sound Toll Registers, Baltic trade, early modern, and eigenvector centrality
- Title:
- Sound Toll Registers Edgelist (1670-1857)
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- Creator:
- Jung, Ilyoung, Kyprianidis, Antonis, Schroer, Frank G., Burkle, Thomas W., Lyons, Jack, and Richerme, Philip
- Description:
- SD spectroscopy folder: the raw h5py files stored in the folder with date when the experiment taken / recorded RID(experiment name) and average mean counts over 20 repeitions in Excel files (SD spectroscopy RID only1 and SD spectroscopy) / SD spectroscopy.py for data analysis. Shelving rate: raw h5py file in the folder with date when the experiment taken / recorded RID (experiment name) in Excel file (411 Optical pumping) / Shelving rate.py for data analysis Shelving experiment: raw h5py file in the folder with date when the experiment taken / recorded RID (experiment name) in Excel file for each case of shelving (Shelving data1 for three ion dynamics: each column for each shelving configuration and a group of 4 RIDs corresponds to single time point & Two ion shelving exp for two ion dynamics: first column as time point, the others are RID at that time point) / Three ion shelving experiment data analysis.py and Two ion shelving experiment data analysis.py for data analysis. Deshelving rate: raw h5py file in the folder with date when the experiment taken / recorded RID (experiment name) in Excel file for each Rabi frequency case (Deshelving RID xx kHz) / Deshelving rate.py for data analysis
- Citation to related publication:
- arXiv preprint arXiv:2602.10307
- Title:
- Dataset for "In-Situ Rewiring of Two-Dimensional Ion Lattice Interactions Using Metastable State Shelving"
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- Creator:
- Dekydtspotter, Laurent, Miller, A. Kate, Iverson, Mike, Cha, Jih-ho, Yang, Ludan, Gilbert, Jane, Zhang, Hongyu, Meinert, Kent , Li, Qin, and Ahn, Jae Hyun
- Description:
- The stimuli consisted of 200 items, among which 100 critical items included 25 quadruples as in (1a-d), with 50 more English-like items in which the gender of the clitic or strong pronoun reflected the gender of the antecedent (1a, b), and 50 less English-like items in which the genitive pronoun agreed in gender with the head noun of the genitive structure rather than with the antecedent (1c, d). Of these second 50 items, 25 had a female antecedent in the matrix clause as in (1c), and 25 had a male antecedent as in (1d). Similarly, half of the more English-like items (1a, b) involved masculine pronouns le and lui ‘3p.sing.masc’ and half involved feminine pronouns la and elle ‘3p.sing.fem’. Crucially, antecedent-gender-specified pronouns la and elle and antecedent-gender-unspecified pronoun son all allow the retrieval of the matrix subject as the antecedent. The 100 distractor items involved complex interrogative structures and permutations like target items, counterbalanced so that no grouping stood out. (1a) Quelle décision le concernant est-ce que Paul a dit t que Lydie avait rejetée t which decision him regarding is-it that Paul has said that Lydie had rejected sans hésitation ? without hesitation ‘Which decision regarding him did Paul say that Lydie had rejected without hesitation?’ (1b) Quelle décision à propos de lui est-ce que Paul a dit t que Lydie avait rejetée t which decision about him is-it that Paul has said that Lydie had rejected sans hésitation ? without hesitation ‘Which decision about him did Paul say that Lydie had rejected without hesitation?’ (1c) Quelle décision à son sujet est-ce que Paul a dit t que Lydie avait rejetée t which decision about him/her is-it that Paul has said that Lydie had rejected sans hésitation ? without hesitation ‘Which decision regarding him did Paul say that Lydie had rejected without hesitation? (1d) Quelle décision à son sujet est-ce que Lydie a dit t que Paul avait rejetée t which decision about him is-it that Lydie has said that Paul had rejected sans hésitation ? without hesitation ‘Which decision about him did Lydie say that Paul had rejected without hesitation?’ E-Prime delivered the stimuli in a rapid serial visual presentation (RSVP) reading task. The stimuli appeared word by word at the center of the screen in 36-point Consolas font, using normal orthographic conventions. They appeared in four blocks presented in random order. Within each block, stimuli were also presented in random order. Participants sat in a chair facing a computer monitor at a distance of approximately four feet. A fixation cross at the center of the screen preceded each item, lasting 700ms. The task was found to be hard but manageable to advanced L2 speakers in stimuli preparation. Due to the time required for E-prime to load each word and for the monitor’s refresh rate, the total presentation time per word was 566ms (300ms presentation, 250ms interstimulus interval, and a 16ms refresh rate between words) accommodating L2 speakers without being unnaturally slow for L1 speakers. Respondents were trained to read questions like the stimuli and then accept or reject follow-up comprehension statements, which were presented in their entirety for a maximum of 3500ms. These comprehension checks were of several types: Some examined the propensity for an anaphoric interpretation, while others queried other aspects of the sentences. Participants quickly responded to the statements by pressing the left arrow key for ‘Yes/True’ and the right arrow key for ‘No/False.’ There was a training session of six items, which could be repeated before moving on to the experiment. In the training, all items were followed by a comprehension statement; in the task, only two thirds were. However, L1 and L2 speakers alike interpreted the pronoun as referring to the gender-matched noun phrase 70% of the time in critical stimuli. Naturally, a set of questions like our stimuli seems plausible in only a limited set of situations. Thus, respondents were introduced to a context involving two characters who were devoted followers of a television series. One of the characters, however, had missed some episodes and asked the other character questions to catch up.
- Keyword:
- Merge, Movement, Language Faculty, EEG, Biolinguistics, and Bilingualism
- Title:
- Dataset for Aperiodic Dynamics for L1 and L2 Processing of French Wh-Dependencies
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- Creator:
- Swiezy, Naomi B.; Neal, Tiffany Jill.; Stump, Timothy E.; Garman-McClaine, Blaine A.; Devarapalli, Baby Amulya; Gottipati, Mounika; Monahan, Patrick O.
- Description:
- This dataset was generated as part of a multi‑year research effort examining differences in autism spectrum disorder (ASD) knowledge among caregivers and providers across disciplines and levels of experience . This dataset consists of de‑identified survey data from the Autism Knowledge Survey–Revised (AKS‑R) and is provided in SPSS (.sav) format with variable names, labels, and value labels embedded. The file includes item‑level responses, derived knowledge scores, and basic demographic variables related to participant role and experience. No direct or indirect personal identifiers are included.
- Keyword:
- Autism spectrum disorder, Autism knowledge, Caregivers, Healthcare providers, Education personnel, mental health, measurement of knowledge, parent training, evidence-based practices, healthcare education, implementation science
- Title:
- Autism Knowledge Survey–Revised (AKS‑R) Dataset: Caregiver and Provider Knowledge of Autism Spectrum Disorder, 2006–2017
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- Creator:
- Marion, Monica M and Milojevic, Stasa
- Description:
- Data was compiled from several publicly available sources of scientific and educational data (NSF Awards Search, SciSciNet data lake, Web of Science broad disciplinary, Lightcast skills, O*Net Content Model Reference) with details and links available in the dataset readme. Text from these data sources was processed using NLP methods in a series of Python and R scripts, available with full description in the dataset repository at https://github.com/monica-marion/Interdisciplinary-Training-Grants-Collection.
- Title:
- The NSF interdisciplinary training grants dataset